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Human gut microbiome database

WebWe present the Unified Human Gastrointestinal Genome (UHGG) collection, comprising 204,938 nonredundant genomes from 4,644 gut prokaryotes. These genomes encode >170 million protein sequences, which we collated in the Unified Human Gastrointestinal Protein (UHGP) catalog. Web1 day ago · We found that the gut microbiome, particularly the genus 5-7N15, partially mediates the negative association between urinary (poly)phenols and cardiovascular risk, supporting a key role of the gut microbiome in the health benefits of dietary (poly)phenols. ... , USDA database, and several published papers …

GMrepo v2: a curated human gut microbiome database with ... - PubMed

Web1 day ago · Gene sets were annotated for bacteria using Diamond (version 0.8.35) on the basis of the NCBI NR database. α-Diversity analysis (Ace, Shannon, Sobs and Simpson) was conducted based on the vegan packages in R. ... Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet. Front Nutr, 5 (2024), p. 28. Web1 Jan 2024 · For instance, the human skin microbiome is highly personalized, depending on multiple factors, such as body site, age, ... GMrepo (a comprehensive gut microbiome database stratified by human phenotypes) , and MVP (a microbe-phage association database) . We intend to create more links to external databases as we continue to … meesons security portal https://delozierfamily.net

mBodyMap: a curated database for microbes across …

Web27 Aug 2024 · Information of the microbial genomes and coding genes is publicly available ( www.mbiomenet.org/HRGM/ ). HRGM will facilitate the identification and functional analysis of disease-associated gut microbiota. Background Human gut microbiome is considered the “second human genome” and plays a crucial role in various diseases [ 1, 2 ]. Web29 Oct 2024 · The database connects the five resources through shared nomenclature: (i) the ‘Human metabolism’ and ‘Gut microbiome’ resources share metabolites and reactions, (ii) the nutrients in the ‘Nutrition’ resource are mapped to metabolites that can be shared by the human and gut microbes and (iii) the diseases in the ‘Disease’ resource include … Web15 Feb 2024 · To investigate the geographic distribution of microbiome studies, we used metadata on all human microbiome datasets in the BioSample database, which includes metadata describing samples in the Sequence Read Archive (SRA), DNA Data Bank of Japan, and European Nucleotide Archive [ 20 ]. name of all black chickens

METABOLIC: high-throughput profiling of microbial genomes for ...

Category:Large-scale phage cultivation for commensal human gut bacteria

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Human gut microbiome database

Healthy Gut Microbiome Reference Database Initiated - Bio-IT World

http://raeslab.org/companion/gutsequencedb/ Web17 Aug 2024 · Background: In the last twenty years, new methodologies have made possible the gathering of large amounts of data concerning the genetic information and metabolic …

Human gut microbiome database

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Web4 Oct 2024 · Human gut microbiota is the microbe population involving bacteria, archaea and eukarya inhabiting in our intestine, and has co-evolved with the host to live together ( 1, 2 ). According to the latest estimation, the number of bacteria cells in colon reaches 4 × 10 13, which is approximately equal to the number of Human cells ( 3 ). Web9 Sep 2024 · To help researchers to better understand gut microbes, some important resources have been developed. For example, GMrepo and gutMEGA curated and …

WebThis database provides detailed and accurate metadata of these metagenomics samples, as well as gene catalogs for host-associated microbiome, and moreover, well … Web12 Apr 2024 · Observational studies revealed altered gut microbial composition in patients with allergic diseases, which illustrated a strong association between the gut microbiome and the risk of allergies. However, whether such associations reflect causality remains to be well-documented. Two-sample mendelian randomization (2SMR) was performed to …

Web28 Oct 2024 · In that regard, we developed mBodyMap, a curated database for microbes across 22 human body sites and their relationships with health and diseases. Overall, … Web6 Nov 2024 · In a paper published in September in PLOS ONE ( doi: 10.1371/journal.pone.0206484 ), a group of researchers presents their efforts to address this issue. They describe an initial baseline healthy gut microbiome reference database and put forth a prototype reporting template. The goal behind the work is to map the healthy …

Web13 Jun 2024 · The human genome consists of about 23 000 genes, whereas the microbiome encodes over three million genes producing thousands of metabolites, which replace many of the functions of the host,13 consequently influencing the host’s fitness, phenotype, and health.2 Box 1 ### Glossary RETURN TO TEXT Twin studies have …

Web16 Feb 2024 · We parsed the KEGG module database ... Gaskins HR, Anantharaman K: Diversity and distribution of sulfur metabolism in the human gut microbiome and its association with colorectal cancer. bioRxiv 2024:2024.2007.2001.450790. Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, Ruscheweyh H-J, Tappu R. MEGAN … name of all care bearsWebThe microbiome is even labeled a supporting organ because it plays so many key roles in promoting the smooth daily operations of the human body. Each person has an entirely unique network of microbiota that is … name of all countries in alphabetical orderWeb12 Apr 2024 · Observational studies revealed altered gut microbial composition in patients with allergic diseases, which illustrated a strong association between the gut … name of all cars in indiaWeb29 Jul 2024 · Human gut microbiomes 12205 3 2024-07-29 Creator: [email protected] Updater: [email protected] The human gut microbiota refers to the all the microorganism that inhabit the human gastrointestinal tract. Diverse roles of the gut microbiota in human health and disease have been reorgnized. meesons lodge care homeWebMeasure the microbiome with unparalleled accuracy and coverage. Much of the microbiome remains undescribed by science due to the limitations of conventional analysis techniques. Using advanced metagenomic sequencing technology and proprietary bioinformatic tools, Microba provides precise and comprehensive measurement of the … mees regulations listed buildingsWeb31 Jul 2024 · In this work, we aimed to create a collection of the most prevalent healthy human gut prokaryotic genomes, to be used as a reference database, including both … meeson shropshireWeb12 Apr 2024 · The role of the human gut microbiome in colorectal cancer (CRC) is unclear as most studies on the topic are unable to discern correlation from causation. We apply two-sample Mendelian ... mees regulations 2023 gov