WebWe present the Unified Human Gastrointestinal Genome (UHGG) collection, comprising 204,938 nonredundant genomes from 4,644 gut prokaryotes. These genomes encode >170 million protein sequences, which we collated in the Unified Human Gastrointestinal Protein (UHGP) catalog. Web1 day ago · We found that the gut microbiome, particularly the genus 5-7N15, partially mediates the negative association between urinary (poly)phenols and cardiovascular risk, supporting a key role of the gut microbiome in the health benefits of dietary (poly)phenols. ... , USDA database, and several published papers …
GMrepo v2: a curated human gut microbiome database with ... - PubMed
Web1 day ago · Gene sets were annotated for bacteria using Diamond (version 0.8.35) on the basis of the NCBI NR database. α-Diversity analysis (Ace, Shannon, Sobs and Simpson) was conducted based on the vegan packages in R. ... Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet. Front Nutr, 5 (2024), p. 28. Web1 Jan 2024 · For instance, the human skin microbiome is highly personalized, depending on multiple factors, such as body site, age, ... GMrepo (a comprehensive gut microbiome database stratified by human phenotypes) , and MVP (a microbe-phage association database) . We intend to create more links to external databases as we continue to … meesons security portal
mBodyMap: a curated database for microbes across …
Web27 Aug 2024 · Information of the microbial genomes and coding genes is publicly available ( www.mbiomenet.org/HRGM/ ). HRGM will facilitate the identification and functional analysis of disease-associated gut microbiota. Background Human gut microbiome is considered the “second human genome” and plays a crucial role in various diseases [ 1, 2 ]. Web29 Oct 2024 · The database connects the five resources through shared nomenclature: (i) the ‘Human metabolism’ and ‘Gut microbiome’ resources share metabolites and reactions, (ii) the nutrients in the ‘Nutrition’ resource are mapped to metabolites that can be shared by the human and gut microbes and (iii) the diseases in the ‘Disease’ resource include … Web15 Feb 2024 · To investigate the geographic distribution of microbiome studies, we used metadata on all human microbiome datasets in the BioSample database, which includes metadata describing samples in the Sequence Read Archive (SRA), DNA Data Bank of Japan, and European Nucleotide Archive [ 20 ]. name of all black chickens